knitr: A General-Purpose Package for Dynamic Report Generation in R

Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.

Version: 1.30
Depends: R (≥ 3.2.3)
Imports: evaluate (≥ 0.10), highr, markdown, stringr (≥ 0.6), yaml (≥ 2.1.19), methods, xfun (≥ 0.15), tools
Suggests: formatR, testit, digest, rgl (≥ 0.95.1201), codetools, rmarkdown, htmlwidgets (≥ 0.7), webshot, tikzDevice (≥ 0.10), tinytex, reticulate (≥ 1.4), JuliaCall (≥ 0.11.1), magick, png, jpeg, gifski, xml2 (≥ 1.2.0), httr, DBI (≥ 0.4-1), showtext, tibble, sass, ragg, styler (≥ 1.2.0)
Published: 2020-09-22
Author: Yihui Xie ORCID iD [aut, cre], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto ORCID iD [ctb], Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin ModrĂ¡k [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb]
Maintainer: Yihui Xie <xie at yihui.name>
BugReports: https://github.com/yihui/knitr/issues
License: GPL-2 | GPL-3 [expanded from: GPL]
URL: https://yihui.org/knitr/
NeedsCompilation: no
SystemRequirements: Package vignettes based on R Markdown v2 or reStructuredText require Pandoc (http://pandoc.org). The function rst2pdf() require rst2pdf (https://github.com/rst2pdf/rst2pdf).
Citation: knitr citation info
Materials: README NEWS
In views: ReproducibleResearch
CRAN checks: knitr results

Downloads:

Reference manual: knitr.pdf
Vignettes: Custom Print Methods
Not an Introduction to knitr
knitr Reference Card
Display Tables with the JavaScript Library DataTables
Templating with knit_expand()
An R HTML Vignette with knitr
An R Markdown Vignette with knitr
R Markdown with the Docco Classic Style
R Markdown with the Docco Linear Style
Package source: knitr_1.30.tar.gz
Windows binaries: r-devel: knitr_1.30.zip, r-release: knitr_1.30.zip, r-oldrel: knitr_1.30.zip
macOS binaries: r-release: knitr_1.30.tgz, r-oldrel: knitr_1.30.tgz
Old sources: knitr archive

Reverse dependencies:

Reverse depends: basecallQC, BiocSklearn, Data2LD, DeMixT, docknitr, EasyHTMLReport, frequency, frequencyConnectedness, Guitar, LabRS, NatureSounds, PopGenReport, PSIMEX, ReportingTools, reverseR, rmdHelpers, ROCpAI, rrecsys, spThin, svSweave, tab, tangram, tufterhandout
Reverse imports: abseqR, actel, ADAM, ADAMgui, AdhereRViz, ADPclust, advclust, ahpsurvey, AMARETTO, amplican, Anaquin, animint2, apsimx, arsenal, assertive, ASSISTant, attachment, automagic, BatchQC, BayesianFROC, BCHM, bcrm, bdchecks, bdclean, beam, BENMMI, BGVAR, BIGDAWG, binb, BiocCheck, BiocStyle, BiocWorkflowTools, BioInsight, BioNetStat, blandr, blogdown, bookdown, bookdownplus, brainKCCA, cartools, ccostr, CEMiTool, ceterisParibus, checkdown, cheese, chicane, chunkhooks, cleaner, codebook, codified, cola, compareGroups, COMPASS, compcodeR, concurve, condformat, condir, confidence, conflr, cooccurNet, corrgrapher, corto, cpsurvsim, crsra, cystiSim, DAPAR, DAPARdata, dataCompareR, dccvalidator, DEGreport, dendroTools, details, did, DiscoRhythm, distill, dlookr, dmdScheme, DmelSGI, drhur, DynareR, encryptr, ENMTools, envirem, epifitter, EpiReport, EpiSignalDetection, epitab, esATAC, EviewsR, ezknitr, facerec, factorMerger, fcaR, flair, flexdashboard, flextable, flowAI, flowBeads, flowPloidy, flying, FlyingR, forestRK, formattable, funGp, furniture, genogeographer, getable, gglogo, ggPMX, gistr, Gmisc, graph4lg, Greg, gretlR, gSEM, gtsummary, GWASinspector, gWQS, helminthR, HMP16SData, HMP2Data, hoardeR, hR, hrbrthemes, htmlTable, i2dash, iCellR, ideal, igate, iheatmapr, imgrec, inlmisc, IntramiRExploreR, ivdesc, JSmediation, JuliaCall, kableExtra, kfigr, knitLatex, knitrBootstrap, knitrdata, learnr, lemon, lessR, levi, lfmm, liftr, lillies, LineagePulse, linguisticsdown, linl, lintr, lipidomeR, MACPET, manipulateWidget, marked, mdapack, memor, MendelianRandomization, MetaClean, metagam, MetaIntegration, MetaLandSim, metapower, metathis, microbiomeExplorer, microsamplingDesign, mindr, minidown, mitch, MobileTrigger, moderndive, modest, mosaicModel, multisensi, MVNtestchar, MXM, NACHO, nanny, NanoStringQCPro, nanotatoR, ncappc, netSEM, nlraa, occCite, officedown, omicplotR, Onassis, opencpu, OpenStats, oppti, optiRum, Orcs, ORION, orloca, oRus, osmose, PAFit, panelvar, pathfindR, PathoStat, pcaExplorer, phase1PRMD, PhenStat, pinp, pipeComp, pixiedust, pkgnet, pointblank, polmineR, polymapR, POMA, precautionary, PreKnitPostHTMLRender, printr, pRoloc, prt, PSF, PTXQC, pysd2r, qbld, qcmetrics, qmethod, qPLEXdata, qqplotr, qte, quokar, qwraps2, radiant.data, radix, RagGrid, rAmCharts, rapbase, rasciidoc, rcarbon, RCAS, rchallenge, RcppFaddeeva, Rd2md, rdtLite, rebook, regionReport, regmed, remedy, REPLesentR, rgl, RITAN, rjdmarkdown, rje, rleafmap, RLumShiny, rmarkdown, rmdformats, rmdpartials, rmdwc, rmsb, rNMF, ROC, rosetta, rosr, roxygen2, Rqc, rsf, rsimsum, RSQL, RTCGA, rtemps, rticles, rtimicropem, SASmarkdown, SBGNview, SBGNview.data, scan, scmeth, scoringRules, scTensor, scTGIF, sdcMicro, sdcTable, SEIRfansy, ShinyItemAnalysis, shinyobjects, shinyr, sjPlot, skimr, skpr, SNSequate, spANOVA, spathial, SpatialEpiApp, spelling, spsur, statgenGxE, statgenSTA, stationery, statsr, statVisual, steemr, strm, struct, survMisc, synapter, table1, tablerDash, tables, taxa, TCGAbiolinks, tcgaWGBSData.hg19, teachingApps, testcorr, texPreview, text2speech, TGST, thurstonianIRT, tidypredict, tint, TnT, TPP, trelliscopejs, tscR, tufte, tutorial, ubiquity, ucbthesis, ufs, umx, userfriendlyscience, vcpen, vidger, vitae, vote, vtable, webex, workflowr, wrProteo, xaringan
Reverse suggests: a4Classif, a4Core, a4Preproc, a4Reporting, aaSEA, ABACUS, ABAData, ABAEnrichment, abbyyR, ABC.RAP, ABHgenotypeR, AbSim, abstractr, accelerometry, ACE, ace2fastq, acmeR, acnr, ACSNMineR, ActFrag, ActiveDriverWGS, ActivePathways, activityCounts, actuaryr, AdaptGauss, adaptiveGPCA, adaptMT, AdaSampling, add2ggplot, addinsOutline, additivityTests, addScales, adductData, adductomicsR, adegraphics, adepro, adept, adespatial, adfExplorer, AdhereR, ADImpute, adjclust, admixr, admixturegraph, admmDensestSubmatrix, ADMMsigma, ADMUR, adnuts, adoptr, adpss, ADtools, adventr, AeRobiology, afex, AffiXcan, affycoretools, afpt, aGE, aggregateBioVar, AGHmatrix, agridat, agriwater, AHEnsDbs, AHM, ahnr, ahp, aire.zmvm, airGR, airGRteaching, airportr, airqualityES, airr, AirSensor, airt, airway, ajv, akc, akmedoids, ALA4R, alakazam, ALDEx2, alevinQC, alfr, alfred, algo, algorithmia, alignfigR, alleHap, AllelicImbalance, allestimates, alluvial, almanac, alookr, alpaca, AlphaBeta, alphabetr, AlphaPart, AlphaSimR, AlphaVantageClient, alphavantager, alpine, alpineData, ALPS, AlpsNMR, alsace, altair, amapGeocode, AMARETTO, amber, AMCTestmakeR, ameco, amelie, amen, ammistability, AMModels, AMOUNTAIN, ampir, AMR, amt, AnaCoDa, analogsea, analysisPipelines, analyzer, AncestryMapper, ANCOMBC, Andromeda, andurinha, AneuFinder, ANF, AnglerCreelSurveySimulation, anim.plots, animalcules, anipaths, AnnotationBustR, AnnotationDbi, AnnotationFilter, AnnotationForge, AnnotationHub, AnnotationHubData, annotatr, ANOM, anomalize, anota2seq, ANOVAreplication, anovir, anscombiser, antaresEditObject, antaresProcessing, antaresRead, antaresViz, AnthropMMD, Anthropometry, anticlust, antitrust, AnVIL, AnVILBilling, AnVILPublish, anyLib, aof, aoos, AOV1R, apa, APAlyzer, apaTables, apcf, apcluster, apeglm, apex, apexcharter, aphid, APIS, aplore3, apollo, applicable, apricom, apyramid, AQuadtree, ArchaeoChron, ArchaeoPhases, archeofrag, archivist, archivist.github, arctools, areal, arealDB, arena2r, arenar, argonR, argparse, ArgumentCheck, ari, ARIbrain, ariExtra, arkdb, arkhe, armspp, ARPobservation, arrangements, arrayQualityMetrics, arrow, artMS, ARTool, aRxiv, ASAFE, ascii, asciicast, asciiSetupReader, AshkenazimSonChr21, ashr, ASICS, ASICSdata, ASMap, ASpediaFI, aspi, aSPU, assertable, assertr, AssessORF, AssessORFData, AssetCorr, ASSIGN, assignPOP, assignR, asus, asymmetry, asymptor, atable, ATACseqQC, atsd, attempt, AUCell, auctestr, auctionr, audiometry, auditor, augmentedRCBD, auk, aurelius, ausplotsR, AUtests, auth0, auto.pca, AutoDeskR, autoimage, automultinomial, autoplotly, autothresholdr, autoTS, Autotuner, avar, aVirtualTwins, aweek, AWFisher, aws.alexa, AzureAuth, AzureCognitive, AzureContainers, AzureGraph, AzureKeyVault, AzureKusto, azuremlsdk, AzureQstor, AzureRMR, AzureStor, AzureTableStor, AzureVision, AzureVM, BaalChIP, babar, babette, BACA, BacArena, backbone, backpipe, backShift, bacon, bacondecomp, badgecreatr, baggr, bain, balance, Ball, ballgown, BALLI, bama, bambu, bamlss, BaMORC, bamp, bamsignals, BANDITS, bang, bannerCommenter, banocc, BANOVA, banR, baRcodeR, BARIS, barplot3d, BART, baRulho, BAS, base.rms, base2grob, base64url, baseballDBR, BaseSet, BASiCS, BasicSTARRseq, basictabler, basilisk, basilisk.utils, BASiNET, basket, BASS, batata, batchelor, BatchGetSymbols, batchtools, BaTFLED3D, BAwiR, bayes4psy, bayesAB, bayesanova, BayesCombo, bayesCT, bayesdfa, bayesDP, BayesESS, BayesFactor, BayesGOF, BayesianNetwork, BayesianPower, BayesianReasoning, BayesianTools, bayesImageS, BayesLN, bayesm, BayesMAMS, BayesMassBal, bayesmeta, bayesmove, BayesMRA, bayesplot, BayesPostEst, BayesSampling, BayesSpace, bayestestR, BayesVarSel, bayfoxr, baymedr, bayNorm, baytrends, bazar, bbmle, bbotk, bbricks, bbw, bcaboot, bcc, bcdata, BCEA, BCellMA, Bchron, Bclim, BClustLonG, bcmaps, bcpa, bcROCsurface, bcSeq, BCSub, bcTSNE, BDMMAcorrect, BDP2, bdpar, bdscale, beachmat, beadarray, BeadDataPackR, beadplexr, beakr, beanz, BEARscc, beastier, beautier, BEclear, bedr, beezdemand, behaviorchange, behavr, belg, benchmarkfdrData2019, benchmarkme, benthos, berryFunctions, bestNormalize, BESTree, betaboost, BetaPASS, BETS, BeviMed, bfw, BgeeCall, BgeeDB, BGGM, bggum, BHMSMAfMRI, BHSBVAR, BHTSpack, bib2df, bibliometrix, biclustermd, BICORN, BiDimRegression, BIEN, bife, BiFET, BIGL, bigleaf, bigMap, bigmemoryExtras, bigPint, bigQueryR, bigstep, billboarder, BinarybalancedCut, BinaryDosage, binman, BinMat, binomialMix, binomialRF, binovisualfields, BinQuasi, BinSegBstrap, bio3d, bioacoustics, bioassayR, bioassays, biobroom, biobtreeR, bioC.logs, bioCancer, BiocDockerManager, BiocFileCache, BiocIO, BioCircos, BiocManager, BiocNeighbors, biocompute, BiocOncoTK, BioCor, BiocParallel, BiocPkgTools, BiocSet, BiocSingular, biocthis, biocViews, biogas, biogram, biogrowth, Bioi, bioimagetools, bioinactivation, BioInstaller, biomaRt, biomartr, BIOMASS, biomformat, BioMM, bioOED, Biopeak, BioQC, bioRad, biorxivr, bioseq, bioset, biosigner, biotic, BioTIP, biotmle, BioVenn, bipartite, bipartiteD3, BIRDS, BIS, biscale, biscuiteer, biscuiteerData, bisect, BisqueRNA, bit, bitmexr, BivRec, biwavelet, bizdays, bkmrhat, blacksheepr, blaise, BlandAltmanLeh, blapsr, blastula, blima, blin, blink, BlockCov, blockCV, blockRAR, BloodCancerMultiOmics2017, blorr, BLPestimatoR, blscrapeR, bluster, bmass, bmlm, bmotif, BMRBr, bmrm, BMRSr, bmscstan, bnbc, bnclassify, bnma, BNPdensity, bnpsd, BNrich, bnspatial, bnstruct, bodenmiller, bodymapRat, BOJ, bold, BoltzMM, bomrang, boostr, boot.heterogeneity, bootUR, borrowr, BoSSA, BOSSreg, boundingbox, BoutrosLab.plotting.general, boxr, bpa, bpbounds, bpp, BPRMeth, bRacatus, brainflowprobes, brainImageRdata, BrainSABER, branchpointer, BRDT, breakDown, breakfast, breakpointR, breakpointRdata, breathtestcore, breathteststan, brendaDb, BRETIGEA, brgedata, BRGenomics, brglm2, brickr, BridgeDbR, bridgedist, bridgesampling, brinton, briskaR, brm, brms, brokenstick, broom, broom.helpers, broom.mixed, brotli, BrowserViz, brranching, brt, brunnermunzel, bs4Dash, BSBT, bsem, bSims, bsplus, bsseq, bssm, bst, bsub, BubbleTree, bubblyr, buildmer, bulletcp, BUMHMM, bunching, bunchr, burnr, BUScorrect, busdater, BUSpaRse, butcher, bvartools, bwsTools, bytescircle, c2c, c3, C50, caesar, CAGEfightR, CAGEr, CAISEr, calendar, calm, calpassapi, campfin, camsRad, caMST, camtrapR, cancensus, CancerInSilico, CancerSubtypes, candisc, canprot, cansim, canvasXpress, capitalR, captioner, captr, car, caracas, caRamel, carbonate, card, Cardinal, CardinalWorkflows, careless, caret, caretEnsemble, CARNIVAL, carpenter, caRpools, CARS, cartograflow, cartography, Cascade, cascsim, casebase, casen, casino, CASMAP, cassandRa, CAST, cat.dt, cat2cat, CATALYST, catchr, cate, categoryCompare, catenary, cati, catmap, catmaply, catsim, cattonum, causalCmprsk, causaldrf, CausalImpact, CausalMBSTS, causaloptim, CausalQueries, CausalR, causalsens, causalweight, CB2, cbaf, cbar, CBDA, cBioPortalData, cbsodataR, ccafs, CCAMLRGIS, ccaPP, ccfindR, ccmap, ccRemover, ccrepe, cdata, cder, cdfquantreg, cdparcoord, celaref, celarefData, celda, CellaRepertorium, cellbaseR, CellBench, celldex, cellity, CellMixS, cellranger, cellscape, CellScore, celltrackR, CellTrails, cellTree, cellWise, CENFA, censo2017, Census2016, censusapi, censusr, censusxy, ceRNAnetsim, ceRtainty, ceser, cetcolor, CeTF, CFAcoop, cfDNAPro, CGGP, CGPfunctions, ChainLadder, ChAMP, chandwich, ChangePointTaylor, charlatan, cheatR, chebpol, checkmate, checkpoint, checkr, chemCal, ChemmineDrugs, ChemmineOB, ChemmineR, chemmodlab, ChemoSpec, ChemoSpec2D, chess, chest, CHETAH, Chicago, childesr, childhoodmortality, chilemapas, chillR, chimeraviz, ChIPanalyser, chipenrich, chipenrich.data, ChIPexoQual, chipPCR, ChIPpeakAnno, ChIPseeker, chipseqDBData, ChIPSeqSpike, chirps, chisq.posthoc.test, chk, chlorpromazineR, CHNOSZ, cholera, CholWishart, chorrrds, chromoMap, ChromSCape, chromstaR, chromswitch, chromVAR, CHRONOS, chronosphere, ciccr, cicero, CIEE, cifti, ciftiTools, cimir, cinaR, CINdex, CINNA, cinterpolate, circlize, circRNAprofiler, circumplex, cIRT, CISE, CiteFuse, ciTools, CityWaterBalance, ciuupi, civis, CJAMP, ckanr, Ckmeans.1d.dp, clarifai, ClassifyR, classInt, cleanerR, cleangeo, cleanNLP, cleanUpdTSeq, cleaver, clere, clhs, cli, clifford, clifro, climaemet, climate, climateStability, climatrends, ClimMobTools, ClimProjDiags, climwin, clipr, cliqueMS, CliquePercolation, CLLmethylation, clonotypeR, cloudml, clubSandwich, CluMP, CluMSID, ClussCluster, Cluster.OBeu, clusteredinterference, clusterExperiment, clusterhap, Clustering, ClusterJudge, clustermole, clustermq, clusternomics, clusterProfiler, ClusterR, ClusterSignificance, ClustGeo, clustifyr, clustifyrdatahub, ClustImpute, clustree, ClustVarLV, clustvarsel, CLVTools, cmapR, cmdfun, CME.assistant, cmocean, cms, cmstatr, cmvnorm, CNAIM, cnbdistr, CNEr, cNORM, CNVfilteR, CNVPanelizer, CNVRanger, CNVrd2, CNVScope, coala, cobalt, coca, COCOA, cocorresp, coda.base, codalm, CodeDepends, codelink, codemetar, CoDiNA, codingMatrices, codyn, coefplot, coenocliner, coexnet, cofad, CoFRA, CoGAPS, cogena, cognitoR, cohorttools, coil, coinmarketcapr, Coinprofile, cointmonitoR, cointReg, colf, collapse, CollapseLevels, collectArgs, collector, coloc, colocr, colorBlindness, colorDF, colordistance, colorednoise, colorhcplot, colorist, colorpatch, colorspace, colorSpec, colourpicker, colourvision, colr, colt, comat, combi, combinedevents, coMET, CommonJavaJars, commonsMath, comorbidity, Compack, comparer, compartmap, compboost, compEpiTools, comperank, comperes, completejourney, ComplexHeatmap, complexity, compositions, composits, comprehenr, compstatr, comsimitv, comtradr, condTruncMVN, condusco, condvis2, conf, CONFESS, config, configr, confintr, confoundr, confSAM, CongreveLamsdell2016, conjurer, conquestr, consensus, consensusDE, consensusOV, consensusSeekeR, ConsReg, constellation, conStruct, contact, contactdata, container, contentid, contextual, ContourFunctions, contrast, contribution, conumee, convexjlr, convey, CoopGame, CoordinateCleaner, copula, CopulaDTA, CopyNeutralIMA, CopyNumberPlots, coRanking, corazon, Corbi, coRdon, coreCT, CoRegFlux, CoRegNet, CoreGx, corHMM, CornerstoneR, cornet, coronavirus, CoRpower, corpus, corpustools, corr2D, corral, corrcoverage, CorrectOverloadedPeaks, corregp, correlation, correlationfunnel, corrgram, corrplot, corrr, cort, cosa, coseq, cosinor, cosinor2, COSMIC.67, CoSMoS, cotram, CountClust, countcolors, countfitteR, Countr, countsimQC, countyfloods, countytimezones, countyweather, CovCombR, coveffectsplot, covid19.analytics, covid19dbcand, covid19italy, covid19mobility, covid19nytimes, covid19sf, covid19swiss, covr, covRNA, cowbell, cowplot, cowsay, coxed, coxmeg, coxphw, coxrt, CPBayes, cPCG, cpp11, cppRouting, cpr, cpsvote, cptec, cqcr, crandep, cranly, credentials, creditmodel, credule, cregg, cRegulome, CRF, crfsuite, crimedata, crimelinkage, crisprseekplus, CrispRVariants, crmPack, crochet, crone, cronR, CropDetectR, crossmeta, crossrun, CrossVA, crosswalkr, crplyr, crso, crtests, crul, crunch, crunchy, csaw, cSEM, CSFA, csodata, csp, cspp, CSSQ, CSTools, CTD, ctgGEM, ctmcd, ctmle, ctmm, CTP, cTRAP, ctrdata, ctsem, ctsemOMX, ctsGE, CUB, cubature, Cubist, cultevo, cumulocityr, curatedAdipoArray, curatedAdipoChIP, curatedAdipoRNA, curatedMetagenomicData, curatedTCGAData, curephEM, curl, curstatCI, customCMPdb, customLayout, customsteps, cusum, cutpointr, cvcqv, cvcrand, CVEK, cvequality, cvGEE, cvms, CVXR, cwbtools, cycleRtools, cyclomort, cydar, cyphr, CytobankAPI, CytoDx, cytofan, cytofast, cytolib, cytomapper, cytometree, cytominer, CytoML, CytoTree, czechrates, D3GB, DAAG, DAAGbio, dabestr, dabr, DACF, dad, dada2, dagitty, dagLogo, DAIME, DAISIE, DAMEfinder, DaMiRseq, DAMisc, damr, dams, dann, danstat, daqapo, Dark, dartR, dashboardthemes, dashCoreComponents, dashHtmlComponents, dasper, dat, data.table, data.tree, DatabaseConnector, DatabionicSwarm, datadigest, DataEditR, datafsm, datagovsgR, dataMaid, datamaps, dataMeta, dataone, datapack, datapackage.r, datapasta, dataPreparation, dataRetrieval, datarium, datarobot, datasauRus, DataSpaceR, dataspice, datastepr, datastructures, dataverse, DataVisualizations, daymetr, dbflobr, DBI, DBItest, dbmss, dbparser, dbplyr, dbscan, dcanr, DCEM, DCG, dcGSA, dcmodify, DCPO, dde, ddiv, ddpcr, ddsPLS, DealGPL570, dearseq, debar, debCAM, deBInfer, debrowser, debugr, decido, DecisionAnalysis, decisionSupport, deckgl, DeclareDesign, deco, decode, decoder, DEComplexDisease, decomposedPSF, decompr, decompTumor2Sig, decontam, deconvolveR, deductive, DeepBlueR, deepdep, deepgp, deepredeff, deepSNV, deflateBR, DEFormats, DegNorm, deGradInfer, deisotoper, delayed, DelayedArray, DelayedDataFrame, DelayedMatrixStats, DeLorean, deltaCaptureC, deltaGseg, DemografixeR, demoShiny, dendextend, dendRoAnalyst, dendrometeR, dendsort, denoiSeq, denovolyzeR, densitr, densratio, densvis, denvax, DEP, DepecheR, DepLogo, DEploid, depmap, DEqMS, derfinder, derfinderData, derfinderHelper, derfinderPlot, derivmkts, DEScan2, DescriptiveStats.OBeu, descriptr, descstatsr, desctable, DESeq2, designr, DEsingle, desiR, desplot, DEsubs, detectRUNS, detectseparation, DetLifeInsurance, detrendr, detzrcr, devRate, devtools, DevTreatRules, DEWSeq, DEXSeq, dexter, dextergui, dexterMST, dfadjust, dfidx, dfoliatR, dformula, dfvad, DGCA, DGVM3D, DHARMa, dhh, DHS.rates, di, diagis, diagonals, DiagrammeR, DIAlignR, DiallelAnalysisR, dialr, dials, diathor, diceR, dietr, diezeit, diffcyt, diffdf, diffEnrich, diffeqr, DiffLogo, diffloop, diffloopdata, diffobj, diffpriv, diffrprojects, diffrprojectswidget, DiffusionRgqd, DiffusionRimp, DiffusionRjgqd, diffusr, diffuStats, DiffXTables, digest, dimensionsR, DImodels, dimRed, dint, diproperm, dipsaus, DirectEffects, directlabels, dirichletprocess, DirichletReg, dirmcmc, disaggregation, discfrail, disclapmix, discnorm, discord, discordant, 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Reverse enhances: collapsibleTree, htmltools, kimisc, networkD3, patchSynctex, svgPanZoom, threejs

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