VDJgermlines: Variable, Diversity and Joining Sequences from Various Species

Contains variable, diversity, and joining sequences and accompanying functions that enable both the extraction of and comparison between immune V-D-J genomic segments from a variety of species. Sources include IMGT from MP Lefranc (2009) <doi:10.1093/nar/gkn838> and Vgenerepertoire from publication DN Olivieri (2014) <doi:10.1007/s00251-014-0784-3>.

Version: 0.1
Depends: R (≥ 3.1.0), ape, stringdist
Suggests: knitr, rmarkdown
Published: 2018-12-18
Author: Alexander Yermanos
Maintainer: Alexander Yermanos <ayermanos at gmail.com>
License: GPL-2
NeedsCompilation: no
CRAN checks: VDJgermlines results

Downloads:

Reference manual: VDJgermlines.pdf
Package source: VDJgermlines_0.1.tar.gz
Windows binaries: r-devel: VDJgermlines_0.1.zip, r-devel-gcc8: VDJgermlines_0.1.zip, r-release: VDJgermlines_0.1.zip, r-oldrel: VDJgermlines_0.1.zip
OS X binaries: r-release: VDJgermlines_0.1.tgz, r-oldrel: VDJgermlines_0.1.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=VDJgermlines to link to this page.