Last updated on 2021-04-22 14:49:01 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.0 | 143.07 | 447.90 | 590.97 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.1.0 | 95.06 | 334.80 | 429.86 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.1.0 | 572.50 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.0 | 600.23 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 2.1.0 | 296.00 | 180.00 | 476.00 | NOTE | |
| r-devel-windows-x86_64-gcc10-UCRT | 2.1.0 | NOTE | ||||
| r-patched-linux-x86_64 | 2.1.0 | 110.11 | 390.50 | 500.61 | OK | |
| r-patched-solaris-x86 | 2.1.0 | 5.90 | ERROR | |||
| r-release-linux-x86_64 | 2.1.0 | 113.66 | 385.64 | 499.30 | OK | |
| r-release-macos-x86_64 | 2.1.0 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 2.1.0 | 299.00 | 163.00 | 462.00 | NOTE | |
| r-oldrel-macos-x86_64 | 2.1.0 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 2.1.0 | 218.00 | 7.00 | 225.00 | ERROR |
Version: 2.1.0
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-x86_64-gcc10-UCRT
Version: 2.1.0
Check: installed package size
Result: NOTE
installed size is 11.7Mb
sub-directories of 1Mb or more:
libs 10.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64
Version: 2.1.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘OpenMx’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-patched-solaris-x86
Version: 2.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [47s/47s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
>
> test_check("gwsem")
══ Skipped tests ═══════════════════════════════════════════════════════════════
● On Mac (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure (test-formats.R:115:1): (code run outside of `test_that()`) ─────────
rmse(bgen$snp_to_F, pgen$snp_to_F) not equal to 0.
1/1 mismatches
[1] 1.76 - 0 == 1.76
[ FAIL 1 | WARN 7 | SKIP 1 | PASS 188 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 2.1.0
Check: examples
Result: ERROR
Running examples in ‘gwsem-Ex.R’ failed
The error most likely occurred in:
> ### Name: plot.gwsemResult
> ### Title: Creates a Manhattan plot
> ### Aliases: plot.gwsemResult
>
> ### ** Examples
>
> tdir <- tempdir()
> dir <- system.file("extdata", package = "gwsem")
> pheno <- data.frame(anxiety=rnorm(500))
> m1 <- buildItem(pheno, 'anxiety')
> GWAS(m1, file.path(dir,"example.bgen"),
+ file.path(tdir,"out.log"))
Running OneItem with 3 parameters
Done. See '/tmp/RtmphDaWQ2/out.log' for results
> got <- loadResults(file.path(tdir,"out.log"), "snp_to_anxiety")
> plot(got)
Warning in data.matrix(x) : NAs introduced by coercion
Warning in data.matrix(x) : NAs introduced by coercion
Warning in data.matrix(x) : NAs introduced by coercion
Warning in data.matrix(x) : NAs introduced by coercion
Warning in data.matrix(x) : NAs introduced by coercion
Warning in min(x) : no non-missing arguments to min; returning Inf
Warning in max(x) : no non-missing arguments to max; returning -Inf
Error in plot.window(...) : need finite 'ylim' values
Calls: plot ... localPlot -> plot -> plot.default -> localWindow -> plot.window
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 2.1.0
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-oldrel-windows-ix86+x86_64